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GST Registration · 17 Sep 2026 · 6 min read

GST for E-commerce Sellers: Registration, TCS and Returns

How GST works for sellers on Amazon, Flipkart, Meesho and your own website, including TCS credit and return reconciliation.

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Quick answer

E-commerce sellers generally need GST registration to sell through marketplaces, regardless of turnover, with some exceptions for small intra-state sellers. Marketplaces collect TCS on your net sales and report it in GSTR-8; you claim the credit in your cash ledger. Reconcile marketplace reports with GSTR-1 and GSTR-3B every month.

Registration for online sellers

Most marketplaces ask for a GSTIN at onboarding. If you sell inter-state or through an e-commerce operator, registration is generally required. A seller with a home address can register using a utility bill and consent letter. Start with our new GST registration service.

TCS and how credit works

E-commerce operators collect tax at source on the net value of taxable supplies made through them and deposit it with the government. The amount appears in your GSTR-2A/2B and credit ledger, and you use it to pay tax liability.

Returns for e-commerce sellers

  • Report marketplace sales in GSTR-1 by state and rate.
  • Match TCS credit reported by the operator.
  • Report returns and cancellations correctly through credit notes.
  • File GSTR-3B with liability net of TCS credit.

Common mistakes

Using one GSTIN for sales shipped from different states, ignoring place-of-supply rules, not recording returns and commission invoices, and claiming ITC on marketplace fees without checking invoices. Maintain warehouse-wise stock data when using fulfilment centres in multiple states, which may need additional registrations.

Support

Our GST return filing and Zoho Books services help e-commerce sellers automate reconciliation.

FAQs

Frequently asked questions

Do small sellers need GST for Amazon or Flipkart?

Generally yes, though there are limited exceptions for some intra-state sellers below the threshold.

How do I use TCS credit?

It is credited to your electronic cash ledger and can be used to pay GST liability.

Do I need registration in every state where I store goods?

Yes. If goods are stored in a state’s fulfilment centre, you need a place of business registration there.

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